Abstract

A founding paradigm in virology is that the spatial unit of the viral replication cycle is an individual cell. Multipartite viruses have a segmented genome where each segment is encapsidated separately. In this situation the viral genome is not recapitulated in a single virus particle but in the viral population. How multipartite viruses manage to efficiently infect individual cells with all segments, thus with the whole genome information, is a long-standing but perhaps deceptive mystery. By localizing and quantifying the genome segments of a nanovirus in host plant tissues we show that they rarely co-occur within individual cells. We further demonstrate that distinct segments accumulate independently in different cells and that the viral system is functional through complementation across cells. Our observation deviates from the classical conceptual framework in virology and opens an alternative possibility (at least for nanoviruses) where the infection can operate at a level above the individual cell level, defining a viral multicellular way of life.

Data availability

All data are available in the manuscript and in Supplemental Information.Raw data of all quantified green and red fluorescence within individual cells of infected plants are provided as a separate EXCEL supplementary file: Table S4.To allow repeat/reproduce all correlation tests, the 508 raw/unprocessed images (.lsm format) used for preparing all figures and for fluorescence quantification in individual cells have been deposited in the public repository figshare. They can be accessed at the DOI: 10.6084/m9.figshare.5981968

The following data sets were generated

Article and author information

Author details

  1. Anne Sicard

    UMR BGPI, INRA, Centre Occitanie Montpellier, Montpellier, France
    Competing interests
    The authors declare that no competing interests exist.
  2. Elodie Pirolles

    UMR BGPI, INRA, Centre Occitanie Montpellier, Montpellier, France
    Competing interests
    The authors declare that no competing interests exist.
  3. Romain Gallet

    UMR BGPI, INRA, Centre Occitanie Montpellier, Montpellier, France
    Competing interests
    The authors declare that no competing interests exist.
  4. Marie-Stéphanie Vernerey

    UMR BGPI, INRA, Centre Occitanie Montpellier, Montpellier, France
    Competing interests
    The authors declare that no competing interests exist.
  5. Michel Yvon

    UMR BGPI, INRA, Centre Occitanie Montpellier, Montpellier, France
    Competing interests
    The authors declare that no competing interests exist.
  6. Cica Urbino

    UMR BGPI, INRA, Centre Occitanie Montpellier, Montpellier, France
    Competing interests
    The authors declare that no competing interests exist.
  7. Michel Peterschmitt

    UMR BGPI, INRA, Centre Occitanie Montpellier, Montpellier, France
    Competing interests
    The authors declare that no competing interests exist.
  8. Serafin Gutierrez

    UMR BGPI, INRA, Centre Occitanie Montpellier, Montpellier, France
    Competing interests
    The authors declare that no competing interests exist.
  9. Yannis Michalakis

    MIVEGEC (CNRS/IRD/UM), Centre National de la Recherche Scientifique, Montpellier, France
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-1929-0848
  10. Stéphane Blanc

    UMR BGPI, INRA, Centre Occitanie Montpellier, Montpellier, France
    For correspondence
    stephane.blanc@inra.fr
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-3412-0989

Funding

Institut National de la Recherche Agronomique

  • Anne Sicard
  • Elodie Pirolles
  • Romain Gallet
  • Marie-Stéphanie Vernerey
  • Michel Yvon
  • Serafin Gutierrez
  • Stéphane Blanc

Centre National de la Recherche Scientifique

  • Elodie Pirolles
  • Yannis Michalakis

Institut de Recherche pour le developpement

  • Yannis Michalakis

Agence Nationale de la Recherche (ANR-14-CE02-0014)

  • Anne Sicard
  • Elodie Pirolles
  • Romain Gallet
  • Marie-Stéphanie Vernerey
  • Michel Yvon
  • Yannis Michalakis
  • Stéphane Blanc

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Copyright

© 2019, Sicard et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 19,081
    views
  • 1,551
    downloads
  • 52
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Anne Sicard
  2. Elodie Pirolles
  3. Romain Gallet
  4. Marie-Stéphanie Vernerey
  5. Michel Yvon
  6. Cica Urbino
  7. Michel Peterschmitt
  8. Serafin Gutierrez
  9. Yannis Michalakis
  10. Stéphane Blanc
(2019)
A multicellular way of life for a multipartite virus
eLife 8:e43599.
https://doi.org/10.7554/eLife.43599

Share this article

https://doi.org/10.7554/eLife.43599

Further reading

    1. Biochemistry and Chemical Biology
    2. Microbiology and Infectious Disease
    Ana Patrícia Graça, Vadim Nikitushkin ... Gerald Lackner
    Research Article

    Mycofactocin is a redox cofactor essential for the alcohol metabolism of mycobacteria. While the biosynthesis of mycofactocin is well established, the gene mftG, which encodes an oxidoreductase of the glucose-methanol-choline superfamily, remained functionally uncharacterized. Here, we show that MftG enzymes are almost exclusively found in genomes containing mycofactocin biosynthetic genes and are present in 75% of organisms harboring these genes. Gene deletion experiments in Mycolicibacterium smegmatis demonstrated a growth defect of the ∆mftG mutant on ethanol as a carbon source, accompanied by an arrest of cell division reminiscent of mild starvation. Investigation of carbon and cofactor metabolism implied a defect in mycofactocin reoxidation. Cell-free enzyme assays and respirometry using isolated cell membranes indicated that MftG acts as a mycofactocin dehydrogenase shuttling electrons toward the respiratory chain. Transcriptomics studies also indicated remodeling of redox metabolism to compensate for a shortage of redox equivalents. In conclusion, this work closes an important knowledge gap concerning the mycofactocin system and adds a new pathway to the intricate web of redox reactions governing the metabolism of mycobacteria.

    1. Epidemiology and Global Health
    2. Microbiology and Infectious Disease
    Gillian AM Tarr, Linda Chui ... Tim A McAllister
    Research Article

    Several areas of the world suffer a notably high incidence of Shiga toxin-producing Escherichia coli. To assess the impact of persistent cross-species transmission systems on the epidemiology of E. coli O157:H7 in Alberta, Canada, we sequenced and assembled E. coli O157:H7 isolates originating from collocated cattle and human populations, 2007–2015. We constructed a timed phylogeny using BEAST2 using a structured coalescent model. We then extended the tree with human isolates through 2019 to assess the long-term disease impact of locally persistent lineages. During 2007–2015, we estimated that 88.5% of human lineages arose from cattle lineages. We identified 11 persistent lineages local to Alberta, which were associated with 38.0% (95% CI 29.3%, 47.3%) of human isolates. During the later period, six locally persistent lineages continued to be associated with human illness, including 74.7% (95% CI 68.3%, 80.3%) of reported cases in 2018 and 2019. Our study identified multiple locally evolving lineages transmitted between cattle and humans persistently associated with E. coli O157:H7 illnesses for up to 13 y. Locally persistent lineages may be a principal cause of the high incidence of E. coli O157:H7 in locations such as Alberta and provide opportunities for focused control efforts.