1. Epidemiology and Global Health
  2. Medicine

Screening of healthcare workers for SARS-CoV-2 highlights the role of asymptomatic carriage in COVID-19 transmission

  1. Lucy Rivett
  2. Sushmita Sridhar
  3. Dominic Sparkes
  4. Matthew Routledge
  5. Nick K Jones
  6. Sally Forrest
  7. Jamie Young
  8. Joana Pereira-Dias
  9. William L Hamilton
  10. Mark Ferris
  11. M Estee Torok
  12. Luke Meredith
  13. The CITIID-NIHR COVID-19 BioResource Collaboration
  14. Martin D Curran
  15. Stewart Fuller
  16. Afzal Chaudhry
  17. Ashley Shaw
  18. Richard J Samworth
  19. John R Bradley
  20. Gordon Dougan
  21. Kenneth GC Smith
  22. Paul J Lehner
  23. Nicholas J Matheson
  24. Giles Wright
  25. Ian G Goodfellow
  26. Stephen Baker
  27. Michael P Weekes  Is a corresponding author
  1. Department of Infectious Diseases, Cambridge University NHS Hospitals Foundation Trust, United Kingdom
  2. Clinical Microbiology and Public Health Laboratory, Public Health England, United Kingdom
  3. Wellcome Sanger Institute, United Kingdom
  4. Department of Medicine, University of Cambridge, United Kingdom
  5. Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), Jeffrey Cheah Biomedical Centre, Cambridge Biomedical Campus, University of Cambridge, United Kingdom
  6. Academic Department of Medical Genetics, University of Cambridge, United Kingdom
  7. Occupational Health and Wellbeing, Cambridge University Hospitals NHS Foundation Trust, United Kingdom
  8. Department of Microbiology, Cambridge University NHS Hospitals Foundation Trust, United Kingdom
  9. Division of Virology, Department of Pathology, University of Cambridge, United Kingdom
  10. National Institutes for Health Research Cambridge, Clinical Research Facility, United Kingdom
  11. Cambridge University Hospitals NHS Foundation Trust, United Kingdom
  12. Statistical Laboratory, Centre for Mathematical Sciences, United Kingdom
  13. National Institutes for Health Research Cambridge Biomedical Research Centre, United Kingdom
  14. NHS Blood and Transplant, United Kingdom
https://doi.org/10.7554/eLife.58728
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Cite this article
  1. Lucy Rivett
  2. Sushmita Sridhar
  3. Dominic Sparkes
  4. Matthew Routledge
  5. Nick K Jones
  6. Sally Forrest
  7. Jamie Young
  8. Joana Pereira-Dias
  9. William L Hamilton
  10. Mark Ferris
  11. M Estee Torok
  12. Luke Meredith
  13. The CITIID-NIHR COVID-19 BioResource Collaboration
  14. Martin D Curran
  15. Stewart Fuller
  16. Afzal Chaudhry
  17. Ashley Shaw
  18. Richard J Samworth
  19. John R Bradley
  20. Gordon Dougan
  21. Kenneth GC Smith
  22. Paul J Lehner
  23. Nicholas J Matheson
  24. Giles Wright
  25. Ian G Goodfellow
  26. Stephen Baker
  27. Michael P Weekes
(2020)
Screening of healthcare workers for SARS-CoV-2 highlights the role of asymptomatic carriage in COVID-19 transmission
eLife 9:e58728.
https://doi.org/10.7554/eLife.58728
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  3. Download .RIS

Abstract

Significant differences exist in the availability of healthcare worker (HCW) SARS-CoV-2 testing between countries, and existing programmes focus on screening symptomatic rather than asymptomatic staff. Over a 3 week period (April 2020), 1032 asymptomatic HCWs were screened for SARS-CoV-2 in a large UK teaching hospital. Symptomatic staff and symptomatic household contacts were additionally tested. Real-time RT-PCR was used to detect viral RNA from a throat+nose self-swab. 3% of HCWs in the asymptomatic screening group tested positive for SARS-CoV-2. 17/30 (57%) were truly asymptomatic/pauci-symptomatic. 12/30 (40%) had experienced symptoms compatible with coronavirus disease 2019 (COVID-19)>7 days prior to testing, most self-isolating, returning well. Clusters of HCW infection were discovered on two independent wards. Viral genome sequencing showed that the majority of HCWs had the dominant lineage B∙1. Our data demonstrates the utility of comprehensive screening of HCWs with minimal or no symptoms. This approach will be critical for protecting patients and hospital staff.

eLife digest

Patients admitted to NHS hospitals are now routinely screened for SARS-CoV-2 (the virus that causes COVID-19), and isolated from other patients if necessary. Yet healthcare workers, including frontline patient-facing staff such as doctors, nurses and physiotherapists, are only tested and excluded from work if they develop symptoms of the illness.

However, there is emerging evidence that many people infected with SARS-CoV-2 never develop significant symptoms: these people will therefore be missed by ‘symptomatic-only’ testing. There is also important data showing that around half of all transmissions of SARS-CoV-2 happen before the infected individual even develops symptoms. This means that much broader testing programs are required to spot people when they are most infectious.

Rivett, Sridhar, Sparkes, Routledge et al. set out to determine what proportion of healthcare workers was infected with SARS-CoV-2 while also feeling generally healthy at the time of testing. Over 1,000 staff members at a large UK hospital who felt they were well enough to work, and did not fit the government criteria for COVID-19 infection, were tested. Amongst these, 3% were positive for SARS-CoV-2. On closer questioning, around one in five reported no symptoms, two in five very mild symptoms that they had dismissed as inconsequential, and a further two in five reported COVID-19 symptoms that had stopped more than a week previously. In parallel, healthcare workers with symptoms of COVID-19 (and their household contacts) who were self-isolating were also tested, in order to allow those without the virus to quickly return to work and bolster a stretched workforce.

Finally, the rates of infection were examined to probe how the virus could have spread through the hospital and among staff – and in particular, to understand whether rates of infection were greater among staff working in areas devoted to COVID-19 patients. Despite wearing appropriate personal protective equipment, healthcare workers in these areas were almost three times more likely to test positive than those working in areas without COVID-19 patients. However, it is not clear whether this genuinely reflects greater rates of patients passing the infection to staff. Staff may give the virus to each other, or even acquire it at home.

Overall, this work implies that hospitals need to be vigilant and introduce broad screening programmes across their workforces. It will be vital to establish such approaches before ‘lockdown’ is fully lifted, so healthcare institutions are prepared for any second peak of infections.

Introduction

Despite the World Health Organisation (WHO) advocating widespread testing for SARS-CoV-2, national capacities for implementation have diverged considerably (WHO, 2020b; Our World in Data, 2020). In the UK, the strategy has been to perform SARS-CoV-2 testing for essential workers who are symptomatic themselves or have symptomatic household contacts. This approach has been exemplified by recent studies of symptomatic HCWs (Hunter et al., 2020; Keeley et al., 2020). The role of nosocomial transmission of SARS-CoV-2 is becoming increasingly recognised, accounting for 12–29% of cases in some reports (Wang et al., 2020). Importantly, data suggest that the severity and mortality risk of nosocomial transmission may be greater than for community-acquired COVID-19 (McMichael et al., 2020).

Protection of HCWs and their families from the acquisition of COVID-19 in hospitals is paramount, and underscored by rising numbers of HCW deaths nationally and internationally (Cook et al., 2020; CDC COVID-19 Response Team, 2020). In previous epidemics, HCW screening programmes have boosted morale, decreased absenteeism and potentially reduced long-term psychological sequelae (McAlonan et al., 2007). Screening also allows earlier return to work when individuals or their family members test negative (Hunter et al., 2020; Keeley et al., 2020). Another major consideration is the protection of vulnerable patients from a potentially infectious workforce (McMichael et al., 2020), particularly as social distancing is not possible whilst caring for patients. Early identification and isolation of infectious HCWs may help prevent onward transmission to patients and colleagues, and targeted infection prevention and control measures may reduce the risk of healthcare-associated outbreaks.

The clinical presentation of COVID-19 can include minimal or no symptoms (WHO, 2020a). Asymptomatic or pre-symptomatic transmission is clearly reported and is estimated to account for around half of all cases of COVID-19 (He et al., 2020). Screening approaches focussed solely on symptomatic HCWs are therefore unlikely to be adequate for suppression of nosocomial spread. Preliminary data suggests that mass screening and isolation of asymptomatic individuals can be an effective method for halting transmission in community-based settings (Day, 2020). Recent modelling has suggested that weekly testing of asymptomatic HCWs could reduce onward transmission by 16–23%, on top of isolation based on symptoms, provided results are available within 24 hr (Imperial College COVID-19 Response Team, 2020). The need for widespread adoption of an expanded screening programme for asymptomatic, as well as symptomatic HCWs, is apparent (Imperial College COVID-19 Response Team, 2020; Black et al., 2020; Gandhi et al., 2020).

Challenges to the roll-out of an expanded screening programme include the ability to increase diagnostic testing capacity, logistical issues affecting sampling and turnaround times and concerns about workforce depletion should substantial numbers of staff test positive. Here, we describe how we have dealt with these challenges and present initial findings from a comprehensive staff screening programme at Cambridge University Hospitals NHS Foundation Trust (CUHNFT). This has included systematic screening of >1000 asymptomatic HCWs in their workplace, in addition to >200 symptomatic staff or household contacts. Screening was performed using a validated real-time reverse transcription PCR (RT-PCR) assay detecting SARS-CoV-2 from combined oropharyngeal (OP) and nasopharyngeal (NP) swabs (Sridhar et al., 2020). Rapid viral sequencing of positive samples was used to further assess potential epidemiological linkage where nosocomial transmission was suspected. Our experience highlights the value of programmes targeting both symptomatic and asymptomatic staff, and will be informative for the establishment of similar programmes in the UK and globally.

Results

Characteristics of HCW and testing groups

Between 6th and 24th April 2020, 1,270 HCWs in CUHNFT and their symptomatic household contacts were swabbed and tested for SARS-CoV-2 by real-time RT-PCR. The median age of the HCWs was 34; 71% were female and 29% male. The technical RT-PCR failure rate was 2/1,270 (0∙2% see Materials and methods); these were excluded from the ‘Tested’ population for further analysis. Ultimately, 5% (n = 61) of swabs were SARS-CoV-2 positive. 21 individuals underwent repeat testing for a variety of reasons, including evolving symptoms (n = 3) and scoring ‘medium’ probability on clinical COVID-19 criteria (Tables 1–2) (n = 11). All remained SARS-CoV-2 negative. Turn around time from sample collection to resulting was 12–36 hr; this varied according to the time samples were obtained.

Table 1
Clinical criteria for estimating pre-test probability of COVID-19.
COVID-19 probability criteria
MajorFever (>37.8 °C)
New persistent cough
Unprotected close contact with a confirmed case*
MinorHoarse voice
Non-persistent cough
Sore throat
Nasal discharge or congestion
Shortness of breath
Wheeze
Headache
Muscle aches
Nausea and/or vomiting and/or diarrhoea
Loss of sense of taste or smell

  1. *Unprotected close contact defined as either face-to-face contact or spending more than 15 min within 2 metres of an infected person, without wearing appropriate personal protective equipment (PPE).

Table 2
Categories of pre-test probability of COVID-19, according to the presence of clinical features shown in Table 1.
Stratification of COVID-19 probabilityImplications for exclusion from work
High probability≥2 major symptoms or
≥1 major symptom and ≥ 2 minor symptoms		Self-isolate for 7 days from the date of onset, regardless of the test result. Only return to work if afebrile for 48 hr and symptoms have improved*.
Household contacts should self-quarantine for 14 days from the date of symptom onset in the index case, regardless of the test result. If they develop symptoms, they should self-isolate for 7 days from the date of onset, and only return to work if afebrile for 48 hr and symptoms have improved*.
Medium probability1 major symptom or
0 major symptoms and ≥ 3 minor symptoms		Test result positive: self-isolate for 7 days from the date of onset, and only return to work if afebrile for 48 hr and symptoms have improved*. Household contacts should self-quarantine for 14 days from the date of index case symptom onset. If they develop symptoms, they should self-isolate for 7 days from the date of onset, and only return to work if afebrile for 48 hr and symptoms have improved*.
Test result negative: repeat testing at 48 hr from the initial swab. If repeat testing is positive, follow the advice detailed above. If repeat testing is negative, return to work, unless symptoms worsen. Self-quarantine not required for household contacts.
Low probability0 major symptoms and 1–2 minor symptomsTest result positive: self-isolate for 7 days from the date of test, and only return to work if afebrile for 48 hr and symptoms have improved*. Household contacts should self-quarantine for 14 days from the date of test. If they develop symptoms, they should self-isolate for 7 days from the date of onset, and only return to work if afebrile for 48 hr and symptoms have improved*.
Test result negative: return to work, unless symptoms worsen. Self-quarantine not required for household contacts.
Asymptomatic0 major symptoms and 0 minor symptomsTest result positive: self-isolate for 7 days from the date of test. If symptoms develop after the test, self-isolation should occur for 7 days from the date of onset, and return to work should only occur if afebrile for 48 hr and symptoms have improved*. Household contacts should self-quarantine for 14 days from the date of the test. If they develop symptoms, they should self-isolate for 7 days from the date of onset, and only return to work if afebrile for 48 hr and symptoms have improved*.
Test result negative: continue working, unless symptoms develop. Self-quarantine not required for household contacts.

  1. *Residual cough in the absence of other symptoms should not preclude returning to work.

Table 3 outlines the total number of SARS-CoV-2 tests performed in each screening group (HCW asymptomatic, HCW symptomatic, and HCW symptomatic household contact) categorised according to the ward with the highest anticipated risk of exposure to COVID-19 (‘red’, high; ‘amber’, medium; ‘green’, low; Tables 4–5). In total, 31/1,032 (3%) of those tested in the HCW asymptomatic screening group tested SARS-CoV-2 positive. In comparison, 30/221 (14%) tested positive when HCW symptomatic and HCW symptomatic household contact screening groups were combined. As expected, symptomatic HCWs and their household contacts were significantly more likely to test positive than HCWs from the asymptomatic screening group (p<0∙0001, Fisher’s exact test). HCWs working in ‘red’ or ‘amber’ wards were significantly more likely to test positive than those working in ‘green’ wards (p=0∙0042, Fisher’s exact test).

Table 3
Total number of SARS-CoV-2 tests performed in each screening group categorised according to the highest risk ward of potential exposure.
Clinical area
GreenAmberRedUnknownTotal
HCW asymptomatic screening group7/454
(1.5%)		4/78
(5.1%)		20/466
(4.3%)		0/34
(0%)		31/1032
(3%)
HCW symptomatic screening group8/66
(12.1%)		1/9
(11.1%)		17/88
(19.3%)		0/6
(0%)		26/169
(15.4%)
HCW symptomatic household contacts2/14
(14.3%)		0/1
(0%)		0/14
(0%)		2/23
(8.7%)		4/52
(7.7%)
Unknown0/4
(0%)		0/00/7
(0%)		0/4
(0%)		0/15
(0%)
All17/538
(3.2%)		5/88
(5.7%)		37/575
(6.4%)		2/67
(3%)		61/1268
(4.8%)
Table 4
The hospital’s traffic-light colouring system for categorising wards according to anticipated COVID-19 exposure risk.

Different types of PPE were used in each (Table 5).

Red (high risk)Amber (medium risk)Green (low risk)
Areas with confirmed SARS-CoV-2 RT-PCR positive patients, or patients with very high clinical suspicion of COVID-19Areas with patients awaiting SARS-CoV-2 RT-PCR test results, or that have been exposed and may be incubating infectionAreas with no known SARS-CoV-2 RT-PCR positive patients, and none with clinically suspected COVID-19
Table 5
PPE protocols (‘Scenarios’) and their relation to ward category.
PPE ‘Scenarios’
Scenario 0Scenario 1Scenario 2Scenario 3
Area descriptionAll clinical areas without any known or suspected COVID-19 casesDesignated ward, triage and assessment-based care with suspected or confirmed COVID-19 patientsCohorted areas where aerosol-generating procedures are carried out frequently with suspected or confirmed COVID-19 patientsOperating theatres where procedures are performed with suspected or confirmed COVID-19 patients
PPE descriptionFluid resistant face mask at all times, apron and non-sterile gloves for patient contact (within two metres)Surgical scrubs, fluid resistant face mask, theatre cap, eye protection, apron and non-sterile glovesWater repellent gown, FFP3 mask, eye protection, theatre cap, surgical gloves, with an apron and non-sterile gloves in addition for patient contact (within two metres)Water repellent gown, FFP3 mask, eye protection, theatre cap and surgical gloves
Ward categoriesGreen wards,
for example designated areas of emergency department and medical admissions unit. Medical, surgical and haematology wards/outpatient clinics.		Amber + red wards,
for example designated areas of emergency department and medical admissions unit. Designated CoVID-19 confirmed wards.		Amber + red wards,
for example intensive care unit, respiratory units with non-invasive ventilation facilities.		All operating theatres, including facilities for bronchoscopy and endoscopy.

All users of FFP3 masks underwent routine fit-testing prior to usage. Cleaning and re-use of masks, theatre caps, gloves, aprons or gowns was actively discouraged. Cleaning and re-use of eye protection was permitted for certain types of goggles and visors, as specified in the hospital’s PPE protocol. Single-use eye protection was in use in most Scenario 1 and 2 areas, and was not cleaned and re-used. All non-invasive ventilation or use of high-flow nasal oxygen on laboratory-confirmed or clinically suspected COVID-19 patients was performed in negative-pressure (−5 pascals) side rooms, with 10 air changes per hour and use of Scenario 2 PPE. All other aerosol generating procedures were undertaken with Scenario 2 PPE precautions, in negative- or neutral- pressure facilities. General clinical areas underwent a minimum of 6 air changes per hour, but all critical care areas underwent a minimum of 10 air changes per hour as a matter of routine. Surgical operating theatres routinely underwent a minimum of 25 air changes per hour.

Viral loads varied between individuals, potentially reflecting the nature of the sampling site. However, for individuals testing positive for SARS-CoV-2, viral loads were significantly lower for those in the HCW asymptomatic screening group than in those tested due to the presence of symptoms (Figure 1). For the HCW symptomatic and HCW symptomatic contact screening groups, viral loads did not correlate with duration of symptoms or with clinical criteria risk score (Figure 1—figure supplement 1 and data not shown).

Figure 1 with 1 supplement see all
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SARS-CoV-2 RNA CT (cycle threshold) values for those individuals who tested positive shown according to HCW group.

HCW asymptomatic screening group (green circles); HCW symptomatic or symptomatic household contact screening groups (blue squares). A Mann Whitney test was used to compare the two groups. Bars: median + / - interquartile range. Note that lower CT values correspond to earlier detection of the viral RNA in the RT-PCR process and therefore identify swabs with higher numbers of copies of the viral genome.

Three subgroups of SARS-CoV-2 positive asymptomatic HCW

Each individual in the HCW asymptomatic screening group was contacted by telephone to establish a clinical history, and COVID-19 probability criteria (Table 1) were retrospectively applied to categorise any symptoms in the month prior to testing (Figure 2). One HCW could not be contacted to obtain further history. Individuals captured by the HCW asymptomatic screening group were generally asymptomatic at the time of screening, however could be divided into three sub-groups: (i) HCWs with no symptoms at all, (ii) HCWs with (chiefly low-to-medium COVID-19 probability) symptoms commencing ≤7 days prior to screening and (iii) HCWs with (typically high COVID-19 probability) symptoms commencing >7 days prior to screening (Figure 2). 9/12 (75%) individuals with symptom onset >7 days previously had appropriately self-isolated and then returned to work. One individual with no symptoms at the time of swabbing subsequently developed symptoms prior to being contacted with their positive result. Overall, 5/1032 (0.5%) individuals in the asymptomatic screening group were identified as truly asymptomatic carriers of SARS-CoV-2, and 1/1032 (0.1%) was identified as pre-symptomatic. Box 1 shows illustrative clinical vignettes.

Figure 2
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Three subgroups of staff testing SARS-CoV-2 positive from the HCW asymptomatic screening group.

(central pie chart, described in detail in the main text). n = number of individuals (% percentage of total). The peripheral pie charts show number and percentage of individuals in groups (ii – right pie chart) and (iii – left pie chart) with low, medium and high COVID-19 probability symptoms upon retrospective analysis.

Box 1.

Clinical vignettes.

Self-isolation instructions were as described in Table 2.

Case 1: Completely asymptomatic. HCW1 had recently worked on four wards (two ‘green’, two ‘amber’). Upon testing positive, she reported no symptoms over the preceding three weeks, and was requested to go home and self-isolate immediately. HCW1 lived with her partner who had no suggestive symptoms. Upon follow-up telephone consultation 14 days after the test, HCW1 had not developed any significant symptoms, suggesting true asymptomatic infection.

Case 2: Pre-symptomatic. HCW2 was swabbed whilst asymptomatic, testing positive. When telephoned with the result, she reported a cough, fever and headache starting within the last 24 hr and was advised to self-isolate from the time of onset of symptoms (Table 2). Her partner, also a HCW, was symptomatic and had been confirmed as SARS-CoV-2 positive 2 days previously, suggesting likely transmission of infection to HCW2.

Case 3: Low clinical probability of COVID HCW3 developed mild self-limiting pharyngitis three days prior to screening and continued to work in the absence of cough or fever. She had been working in’ green’ areas of the hospital, due to a background history of asthma. Self-isolation commenced from the time of the positive test. HCW3’s only contact outside the hospital, her housemate, was well. On follow-up telephone consultation, HCW3’s mild symptoms had fully resolved, with no development of fever or persistent cough, suggesting pauci-symptomatic infection.

Case 4: Medium clinical probability of COVID HCW4 experienced anosmia, nausea and headache three days prior to screening, and continued to work in the absence of cough or fever. Self-isolation commenced from the time of the positive test. One son had experienced a mild cough ~3 weeks prior to HCW4’s test, however her partner and other son were completely asymptomatic. Upon follow-up telephone consultation 10 days after the test, HCW4’s mild symptoms had not progressed, but had not yet resolved.

Case 5: High clinical probability of COVID. HCW5 had previously self-isolated, and did not repeat this in the presence of new high-probability symptoms six days before screening. Self-isolation commenced from the date of the new symptoms with the caveat that they should be completely well for 48 hr prior to return to work. All household contacts were well. However, another close colleague working on the same ward had also tested positive, suggesting potential transmission between HCWs on that ward.

Identification of two clusters of cases by screening asymptomatic HCWs

For the HCW asymptomatic screening group, nineteen wards were identified for systematic priority screening as part of hospital-wide surveillance. Two further areas were specifically targeted for screening due to unusually high staff sickness rates (ward F), or concerns about appropriate PPE usage (ward Q) (Figure 3). Interestingly, in line with findings in the total HCW population, a significantly greater proportion of HCWs working on ‘red’ wards compared to HCWs working on ‘green’ wards tested positive as part of the asymptomatic screening programme (‘green’ 6/310 vs ‘red’ 19/372; p=0.0389, Fisher’s exact test). The proportion of HCW with a positive test was significantly higher on Ward F than on other wards categorised as ‘green’ clinical areas (ward F 4/43 vs other ‘green’ wards 2/267; p=0.0040, Fisher’s exact test). Likewise, amongst wards in the ‘red’ areas, ward Q showed significantly higher rates of positive HCW test results (ward Q 7/37 vs other ‘red’ wards 12/335; p=0.0011, Fisher’s exact test).

Figure 3
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Distribution of SARS-CoV-2 positive cases across 21 clinical areas, detected by ward-based asymptomatic screening.

(underlying data shown in ‘Source Data’). Wards are coloured (‘green’, ‘amber’, ‘red’) according to risk of anticipated exposure to COVID-19 (Table 4). HCWs working across >1 ward were counted for each area. The left-hand y-axis shows the percentage of positive results from a given ward compared to the total positive results from the HCW asymptomatic screening group (blue bars). The right-hand y-axis shows the total number of SARS-CoV-2 tests (stars) and the number positive (pink circles). Additional asymptomatic screening tests were subsequently performed in an intensified manner on ward F and ward Q after identification of clusters of positive cases on these wards (Figure 4). Asymptomatic screening tests were also performed for a number of individuals from other clinical areas on an opportunistic basis; none of these individuals tested positive. Results of these additional tests are included in summary totals in Table 1, but not in this figure.

Ward F is an elderly care ward, designated as a ‘green’ area with Scenario 0 PPE (Tables 4–5), with a high proportion of COVID-19 vulnerable patients due to age and comorbidity. 4/43 (9%) ward staff tested positive for SARS-CoV-2. In addition, two staff members on this ward tested positive in the HCW symptomatic/symptomatic contact screening groups. All positive HCWs were requested to self-isolate, the ward was closed to admissions and escalated to Scenario 1 PPE (Table 5). Reactive screening of a further 18 ward F staff identified an additional three positive asymptomatic HCWs (Figure 4). Sequence analysis indicated that 6/9 samples from HCW who worked on ward F belonged to SARS-CoV-2 lineage B∙1 (currently known to be circulating in at least 43 countries [Rambaut et al., 2020]), with a further two that belonged to B1∙7 and one that belonged to B2∙1. This suggests more than two introductions of SARS-CoV-2 into the HCW population on ward F (Figure 4—figure supplements 1–2, Table 6). It was subsequently found that two further staff members from ward F had previously been admitted to hospital with severe COVID-19 infection.

Figure 4 with 2 supplements see all
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All SARS-CoV-2 positive HCW identified in Wards F and Q, stratified by their mechanism of identification.

Individuals testing positive for SARS-CoV-2 in the ‘HCW asymptomatic screening group’ were identified by the asymptomatic screening programme. Individuals testing positive in the ‘HCW symptomatic/symptomatic household contact groups’ were identified by self-presentation after developing symptoms. Individuals testing positive in the ‘Reactive screening group’ were identified by an intensified screening programme after initial positive clusters had been recognised.

Ward Q is a general medical ward designated as a ‘red’ clinical area for the care of COVID-19 positive patients, with a Scenario 1 PPE protocol (Tables 4–5). Here, 7/37 (19%) ward staff tested positive for SARS-CoV-2. In addition, one staff member tested positive as part of the HCW symptomatic screening group, within the same period as ward surveillance. Reactive screening of a further five staff working on Ward Q uncovered one additional infection. 4/4 sequenced viruses were of the B∙1 lineage (Figure 4—figure supplements 1–2, Table 6; other isolates could not be sequenced due to a sample CT value >30). All positive HCWs were requested to self-isolate, and infection control and PPE reviews were undertaken to ensure that environmental cleaning and PPE donning/doffing practices were compliant with hospital protocol. Staff training and education was provided to address observed instances of incorrect infection control or PPE practice.

Ward O, a ‘red’ medical ward, had similar numbers of asymptomatic HCWs screened as ward F, and a similar positivity rate (4/44; 9%). This ward was listed for further cluster investigation after the study ended, however incorrect PPE usage was not noted during the study period.

Table 6
Details of each SARS-CoV-2 positive isolate from all HCWs and household contacts in the study.
Patient IDTypeHCW_wardCt valueSeq AttemptedSeq_ID% Sequence CoverageAverage Seq DepthPANGOLIN lineage
C1Symptomatic ContactHCW Contact23.9YCAMB-7FBB099.612048.5B.1
C3Symptomatic ContactHCW Contact23NNot available
H3AsymptomaticB31YCAMB-7C0C398.61835.084B.1
H54SymptomaticB35
H12SymptomaticC16YCAMB-7FB9299.603312.22B.1
H19AsymptomaticE27YCAMB-7FC2699.613632.26B.1.1
C2AsymptomaticF15.5YCAMB-7FC0899.603157.08B.1
H17AsymptomaticF33.6YCAMB-7FBFC99.611167.76B.1
H20AsymptomaticF18YCAMB-7FC3599.611350.65B.1
H21AsymptomaticF22.8YCAMB-7FC4499.603584.79B.1
H22SymptomaticF24YCAMB-7FC5399.603692.14B.1.7
H23AsymptomaticF32.7YCAMB-7FC6299.601610.33B.2.1
H35SymptomaticF36YCAMB-8221F73.00104.391B.1
H36AsymptomaticF29YCAMB-8222E98.591882.65B.1.7
H53Symptomatic ContactHCW Contact23
H38AsymptomaticK36NNot available
H39AsymptomaticK31NNot available
H28SymptomaticK/R/L/T/OTHER18YCAMB-7FD3299.603770.36B.1.11
H11AsymptomaticM32YCAMB-7FB8399.601044.43B.1
H32SymptomaticN33YCAMB-8100797.621196.53B.1
H47SymptomaticN32NNot available
H31AsymptomaticO29YCAMB-80FFC99.592286.08B.1
H45AsymptomaticO36NNot available
H51SymptomaticO33
H57Symptomatic ContactO23
H1AsymptomaticOTHER23YCAMB-7C0A598.612277.92B.1
H6SymptomaticOTHER30YCAMB-7FB2998.751317.43B.1
H7SymptomaticOTHER26YCAMB-7FB4799.613599.59B.1
H10SymptomaticOTHER22YCAMB-7FB7499.60187.059B.1
H14SymptomaticOTHER34YCAMB-7FBCF99.611066.74B.1
H16AsymptomaticOTHER27.8YCAMB-7FBED99.60796.874B.1
H24SymptomaticOTHER21YCAMB-7FC8098.62916.884B.1
H25SymptomaticOTHER21YCAMB-7FC9F99.601505.09B.1
H33SymptomaticOTHER35YCAMB-8101690.92233.779B.1
H40SymptomaticOTHER23NNot available
H46AsymptomaticOTHER36NNot available
H55SymptomaticOther26
H56AsymptomaticOther32
H30AsymptomaticOTHER/K/O/F31YCAMB-80FDE98.611773.74B.1
H5SymptomaticQ24YCAMB-7C1A297.752342.24B.1
H8SymptomaticQ14YCAMB-7FB5699.602452.25B.1
H18AsymptomaticQ30YCAMB-7FC1799.602585.89B.1
H29AsymptomaticQ31YCAMB-80AFB99.602028.31B.1
H42AsymptomaticQ35NNot available
H44AsymptomaticQ28NNot available
H48AsymptomaticQ36NNot available
H49AsymptomaticQ35NNot available
H4SymptomaticR24YCAMB-7C0D298.742083.89B.1
H9SymptomaticR19YCAMB-7FB6599.613288.11B.1
H13SymptomaticR21YCAMB-7FBA199.603307.61B.1
H27AsymptomaticR25YCAMB-7FCBD98.611085.78B.1
H34SymptomaticR30YCAMB-8102599.601997.98B.1
H37AsymptomaticR35NNot available
H52AsymptomaticR34
H58SymptomaticR/S/A/Q/P/L/N/M/K/Other24
H15SymptomaticS/N32YCAMB-7FBDE99.602246.43B.1.7
H41AsymptomaticS/Q31NNot available
H2AsymptomaticT36YCAMB-7C0B493.55293.223B.1
H26AsymptomaticT32YCAMB-7FCAE0.030.189437Not available
H50SymptomaticT34NNot available
H43AsymptomaticU32NNot available

Characteristics of the HCW symptomatic and HCW symptomatic-contact screening groups

The majority of individuals who tested positive for SARS-CoV-2 after screening due to the presence of symptoms had high COVID-19 probability (Table 7). This reflects national guidance regarding self-isolation at the time of our study (UK Government, 2020a).

Table 7
Distribution of positive SARS-CoV-2 tests amongst symptomatic individuals with a positive test result, categorised according to test group and COVID-19 symptom-based probability criteria (as defined in Table 2).
Distribution of COVID-19 clinical probability scores for individuals with a positive SARS-CoV-2 test result
HighMediumLowTotal
HCW symptomatic screening group22/26
(85%)		3/26
(11%)		1/26
(4%)		26/26
(100%)
HCW symptomatic household contacts3/4
(75%)		0/4
(0%)		1/4
(25%)		4/4 (100%)

Discussion

Through the rapid establishment of an expanded HCW SARS-CoV-2 screening programme, we discovered that 31/1,032 (3%) of HCWs tested positive for SARS-CoV-2 in the absence of symptoms. Of 30 individuals from this asymptomatic screening group studied in more depth, 6/30 (20%) had not experienced any symptoms at the time of their test. 1/6 became symptomatic suggesting that the true asymptomatic carriage rate was 5/1,032 (0.5%). 11/30 (37%) had experienced mild symptoms prior to testing. Whilst temporally associated, it cannot be assumed that these symptoms necessarily resulted from COVID-19. These proportions are difficult to contextualise due to paucity of point-prevalence data from asymptomatic individuals in similar healthcare settings or the wider community. For contrast, 60% of asymptomatic residents in a recent study tested positive in the midst of a care home outbreak (Arons et al., 2020). Regardless of the proportion, however, many secondary and tertiary hospital-acquired infections were undoubtedly prevented by identifying and isolating these SARS-CoV-2 positive HCWs.

12/30 (40%) individuals from the HCW asymptomatic screening group reported symptoms > 7 days prior to testing, and the majority experiencing symptoms consistent with a high probability of COVID-19 had appropriately self-isolated during that period. Patients with COVID-19 can remain SARS-CoV-2 PCR positive for a median of 20 days (IQR 17–24) after symptom onset (Zhou et al., 2020), and the limited data available suggest viable virus is not shed beyond eight days (Wölfel et al., 2020). A pragmatic approach was taken to allowing individuals to remain at work, where the HCW had experienced high probability symptoms starting >7 days and ≤1 month prior to their test and had been well for the preceding 48 hr. This approach was based on the following: low seasonal incidence of alternative viral causes of high COVID-19 probability symptoms in the UK (Public Health England, 2018), the high potential for SARS-CoV-2 exposure during the pandemic and the potential for prolonged, non-infectious shedding of viral RNA (Zhou et al., 2020; Wölfel et al., 2020). For other individuals, we applied standard national guidelines requiring isolation for seven days from the point of testing (UK Government, 2020b). However, for HCW developing symptoms after a positive swab, isolation was extended for seven days from symptom onset.

Our data clearly demonstrate that focusing solely on the testing of individuals fitting a strict clinical case definition for COVID-19 will inevitably miss asymptomatic and pauci-symptomatic disease. This is of particular importance in the presence of falling numbers of community COVID-19 cases, as hospitals will become potential epicentres of local outbreaks. Therefore, we suggest that in the setting of limited testing capacity, a high priority should be given to a reactive asymptomatic screening programme that responds in real-time to HCW sickness trends, or (to add precision) incidence of positive tests by area. The value of this approach is illustrated by our detection of a cluster of cases in ward F, where the potential for uncontrolled staff-to-staff or staff-to-patient transmission could have led to substantial morbidity and mortality in a particularly vulnerable patient group. As SARS-CoV-2 testing capacity increases, rolling programmes of serial screening for asymptomatic staff in all areas of the hospital is recommended, with the frequency of screening being dictated by anticipated probability of infection. The utility of this approach in care-homes and other essential institutions should also be explored, as should serial screening of long-term inpatients.

The early success of our programme relied upon substantial collaborative efforts between a diverse range of local stakeholders. Similar collaborations will likely play a key role in the rapid, de novo development of comprehensive screening programmes elsewhere. The full benefits of enhanced HCW screening are critically dependent upon rapid availability of results. A key success of our programme has been bespoke optimisation of sampling and laboratory workflows enabling same-day resulting, whilst minimising disruption to hospital processes by avoiding travel to off-site testing facilities. Rapid turnaround for testing and sequencing is vital in enabling timely response to localised infection clusters, as is the maintenance of reserve capacity to allow urgent, reactive investigations.

There appeared to be a significantly higher incidence of HCW infections in ‘red’ compared to ‘green’ wards. Many explanations for this observation exist, and this study cannot differentiate between them. Possible explanations include transmission between patients and HCW, HCW-to-HCW transmission, variability of staff exposure outside the workplace and non-random selection of wards. It is also possible that, even over the three weeks of the study, ‘red’ wards were sampled earlier during the evolution of the epidemic when transmission was greater. Further research into these findings is clearly needed on a larger scale. Furthermore, given the clear potential for pre-symptomatic and asymptomatic transmission amongst HCWs, and data suggesting that infectivity may peak prior to symptom onset (He et al., 2020), there is a strong argument for basic PPE provision in all clinical areas.

The identification of transmission within the hospital through routine data is problematic. Hospitals are not closed systems and are subject to numerous external sources of infection. Coronaviruses generally have very low mutation rates (~10−6 per site per cycle) (Sanjuán et al., 2010), with the first reported sequence of the current pandemic only published on 12th January 2020 (GenBank, 2020). In addition, given SARS CoV-2 was only introduced into the human population in late 2019, there is at present a lack of diversity in circulating strains. However, as the pandemic unfolds and detailed epidemiological and genome sequence data from patient and HCW clusters are generated, real-time study of transmission dynamics will become an increasingly important means of informing disease control responses and rapidly confirming (or refuting) hospital acquired infection. Importantly, implementation of such a programme would require active screening and rapid sequencing of positive cases in both the HCW and patient populations. Prospective epidemiological data will also inform whether hospital staff are more likely to be infected in the community or at work, and may identify risk factors for the acquisition of infection, such as congregation in communal staff areas or inadequate access to PPE.

Our study is limited by the relatively short time-frame, a small number of positive tests and a lack of behavioural data. In particular, the absence of detailed workplace and community epidemiological data makes it difficult to draw firm conclusions with regards to hospital transmission dynamics. The low rate of observed positive tests may be partly explained by low rates of infection in the East of England in comparison with other areas of the UK (cumulative incidence 0.17%, thus far) (Public Health England, 2020). The long-term benefits of HCW screening on healthcare systems will be informed by sustained longitudinal sampling of staff in multiple locations. More comprehensive data will parametrise workforce depletion and COVID-19 transmission models. The incorporation of additional information including staffing levels, absenteeism, and changes in proportions of staff self-isolating before and after the introduction of widespread testing will better inform the impact of screening at a national and international level. Such models will be critical for optimising the impact on occupationally-acquired COVID-19, and reducing the likelihood that hospitals become hubs for sustained COVID-19 transmission.

In the absence of an efficacious vaccine, additional waves of COVID-19 are likely as social distancing rules are relaxed. Understanding how to limit hospital transmission will be vital in determining infection control policy, and retain its relevance when reliable serological testing becomes widely available. Our data suggest that the roll-out of screening programmes to include asymptomatic as well as symptomatic patient-facing staff should be a national and international priority. Our approach may also be of benefit in reducing transmission in other institutions, for example care-homes. Taken together, these measures will increase patient confidence and willingness to access healthcare services, benefiting both those with COVID-19 and non-COVID-19 disease.

Materials and methods

Staff screening protocols

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Two parallel streams of entry into the testing programme were established and managed jointly by the Occupational Health and Infectious Diseases departments. The first (HCW symptomatic, and HCW symptomatic household contact screening groups) allowed any patient-facing or non-patient-facing hospital employee (HCW) to refer themselves or a household contact, including children, should they develop symptoms suggestive of COVID-19. The second (HCW asymptomatic screening group) was a rolling programme of testing for all patient-facing and non-patient-facing staff working in defined clinical areas thought to be at risk of SARS-CoV-2 transmission. Daily workforce sickness reports and trends in the results of HCW testing were monitored to enable areas of concern to be highlighted and targeted for screening and cluster analysis, in a reactive approach. High throughput clinical areas where staff might be exposed to large numbers of suspected COVID-19 patients were also prioritised for staff screening. These included the Emergency Department, the COVID-19 Assessment Unit, and a number of ‘red’ inpatient wards. Staff caring for the highest priory ‘shielding’ patients (Haematology/Oncology, Transplant medicine) were also screened, as were a representative sample of staff from ‘Amber’ and ‘Green’ areas. The personal protective equipment (PPE) worn by staff in these areas is summarised in Table 5. Inclusion into the programme was voluntary, and offered to all individuals working in a given ward during the time of sampling. Regardless of the route of entry into the programme, the process for testing and follow-up was identical. Wards were closed to external visitors.

We devised a scoring system to determine the clinical probability of COVID-19 based on symptoms from existing literature (Wang et al., 2020; Giacomelli et al., 2020; Table 1). Self-referring HCW and staff captured by daily workforce sickness reports were triaged by designated Occupational Health nurses using these criteria (Table 2). Self-isolating staff in the medium and low probability categories were prioritised for testing, since a change in the clinical management was most likely to derive from results.

Self-isolation and household quarantine advice was determined by estimating the pre-test probability of COVID-19 (high, medium or low) in those with symptoms, based on the presence or absence of typical features (Tables 1–2). Symptom history was obtained for all symptomatic HCWs at the time of self-referral, and again for all positive cases via telephone interview when results became available. All individuals who had no symptoms at the time of testing were followed up by telephone within 14 days of their result. Pauci-symptomatic individuals were defined as those with low-probability clinical COVID-19 criteria (Table 2).

Sample collection procedures

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Testing was primarily undertaken at temporary on-site facilities. Two ‘Pods’ (self-contained portable cabins with office, kitchen facilities, generator and toilet) were erected in close proximity both to the laboratory and main hospital. Outside space was designed to enable car and pedestrian access, and ensure ≥2 m social distancing at all times. Individuals attending on foot were given pre-prepared self-swabbing kits containing a swab, electronically labelled specimen tube, gloves and swabbing instructions contained in a zip-locked collection bag. Pods were staffed by a team of re-deployed research nurses, who facilitated self-swabbing by providing instruction as required. Scenario 1 PPE (Table 5) was worn by Pod nurses at all times. Individuals in cars were handed self-swabbing kits through the window, with samples dropped in collection bags into collection bins outside. Any children (household contacts) were brought to the pods in cars and swabbed in situ by a parent or guardian.

In addition to Pod-based testing, an outreach HCW asymptomatic screening service was developed to enable self-swabbing kits to be delivered to HCWs in their area of work, minimising disruption to the working routine of hospital staff, and maximising Pod availability for symptomatic staff. Lists of all staff working in target areas over a 24 hr period were assembled, and kits pre-prepared accordingly. Self-swabbing kits were delivered to target areas by research nurses, who trained senior nurses in the area to instruct other colleagues on safe self-swabbing technique. Kits were left in target areas for 24 hr to capture a full cycle of shift patterns, and all kits and delivery equipment were thoroughly decontaminated with 70% ethanol prior to collection. Twice daily, specimens were delivered to the laboratory for processing.

Laboratory methods

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The swabbing, extraction and amplification methods for this study follow a recently validated procedure (Sridhar et al., 2020). Individuals performed a self-swab at the back of the throat followed by the nasal cavity as previously described (Our World in Data, 2020). The single dry sterile swab was immediately placed into transport medium/lysis buffer containing 4M guanidine thiocyanate to inactivate virus, and carrier RNA. This facilitated BSL2-based manual extraction of viral RNA in the presence of MS2 bacteriophage amplification control. Use of these reagents and components avoided the need for nationally employed testing kits. Real-time RT-PCR amplification was performed as previously described and results validated by confirmation of FAM amplification of the appropriate controls with threshold cycle (CT) ≤36. Lower CT values correspond to earlier detection of the viral RNA in the RT-PCR process, corresponding with a higher copy number of the viral genome. In 2/1,270 cases, RT-PCR failed to amplify the internal control and results were discarded, with HCW offered a re-test. Sequencing of positive samples was attempted on samples with a CT ≤30 using a multiplex PCR based approach (Quick et al., 2017) using the modified ARTIC v2 protocol (Quick, 2020) and v3 primer set (Artic network, 2020). Genomes were assembled using reference based assembly and the bioinformatic pipeline as described (Quick et al., 2017) using a 20x minimum coverage as a cut-off for any region of the genome and a 50.1% cut-off for calling of single nucleotide polymorphisms (SNPs). Samples were sequenced as part of the COVID-19 Genomics UK Consortium, COG-UK), a partnership of NHS organisations, academic institutions, UK public health agencies and the Wellcome Sanger Institute.

Results reporting

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As soon as they were available, positive results were telephoned to patients by Infectious Diseases physicians, who took further details of symptomatology including timing of onset, and gave clinical advice (Table 2). Negative results were reported by Occupational Health nurses via telephone, or emailed through a secure internal email system. Advice on returning to work was given as described in Table 2. Individuals advised to self-isolate were instructed to do so in their usual place of residence. Particularly vulnerable staff or those who had more severe illness but did not require hospitalisation were offered follow-up telephone consultations. Individuals without symptoms at the time of testing were similarly followed up, to monitor for de novo symptoms. Verbal consent was gained for all results to be reported to the hospital’s infection control and health and safety teams, and to Public Health England, who received all positive and negative results as part of a daily reporting stream.

Data extraction and analysis

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Swab result data were extracted directly from the hospital-laboratory interface software, Epic (Verona, Wisconsin, USA). Details of symptoms recorded at the time of telephone consultation were extracted manually from review of Epic clinical records. Data were collated using Microsoft Excel, and figures produced with GraphPad Prism (GraphPad Software, La Jolla, California, USA). Fisher’s exact test was used for comparison of positive rates between groups defined in the main text. Mann-Whitney testing was used to compare CT values between different categories of tested individuals. HCW samples that gave SARS CoV-2 genomes were assigned global lineages defined by Rambaut et al., 2020 using the PANGOLIN utility (O'Toole and McCrone, 2020).

Ethics and consent

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As a study of healthcare-associated infections, this investigation is exempt from requiring ethical approval under Section 251 of the NHS Act 2006 (see also the NHS Health Research Authority algorithm, available at http://www.hra-decisiontools.org.uk/research/, which concludes that no formal ethical approval is required). Written consent was obtained from each HCW described in the anonymised case vignettes.

Data availability

Sequencing data have been deposited in GSAID under accession codes EPI_ISL_433989-EPI_ISL_433992, EPI_ISL_434005, EPI_ISL_433489-EPI_ISL_433497. Researchers will be prompted to register and log on to the website to access the datasets (https://www.epicov.org/epi3/frontend#1f1442).

References

Article and author information

Author details

  1. Lucy Rivett

    1. Department of Infectious Diseases, Cambridge University NHS Hospitals Foundation Trust, Cambridge, United Kingdom
    2. Clinical Microbiology and Public Health Laboratory, Public Health England, Cambridge, United Kingdom
    Contribution
    Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Writing - review and editing
    Contributed equally with
    Sushmita Sridhar, Dominic Sparkes, Matthew Routledge and Nick K Jones
    Competing interests
    No competing interests declared
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-2781-9345

  2. Sushmita Sridhar

    1. Wellcome Sanger Institute, Hinxton, United Kingdom
    2. Department of Medicine, University of Cambridge, Cambridge, United Kingdom
    3. Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), Jeffrey Cheah Biomedical Centre, Cambridge Biomedical Campus, University of Cambridge, Cambridge, United Kingdom
    Contribution
    Conceptualization, Data curation, Formal analysis, Validation, Methodology, Project administration, Writing - review and editing
    Contributed equally with
    Lucy Rivett, Dominic Sparkes, Matthew Routledge and Nick K Jones
    Competing interests
    No competing interests declared

  3. Dominic Sparkes

    1. Department of Infectious Diseases, Cambridge University NHS Hospitals Foundation Trust, Cambridge, United Kingdom
    2. Clinical Microbiology and Public Health Laboratory, Public Health England, Cambridge, United Kingdom
    Contribution
    Data curation, Formal analysis, Writing - original draft, Project administration, Writing - review and editing
    Contributed equally with
    Lucy Rivett, Sushmita Sridhar, Matthew Routledge and Nick K Jones
    Competing interests
    No competing interests declared

  4. Matthew Routledge

    1. Department of Infectious Diseases, Cambridge University NHS Hospitals Foundation Trust, Cambridge, United Kingdom
    2. Clinical Microbiology and Public Health Laboratory, Public Health England, Cambridge, United Kingdom
    Contribution
    Writing - original draft, Project administration, Writing - review and editing
    Contributed equally with
    Lucy Rivett, Sushmita Sridhar, Dominic Sparkes and Nick K Jones
    Competing interests
    No competing interests declared

  5. Nick K Jones

    1. Department of Infectious Diseases, Cambridge University NHS Hospitals Foundation Trust, Cambridge, United Kingdom
    2. Clinical Microbiology and Public Health Laboratory, Public Health England, Cambridge, United Kingdom
    3. Department of Medicine, University of Cambridge, Cambridge, United Kingdom
    4. Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), Jeffrey Cheah Biomedical Centre, Cambridge Biomedical Campus, University of Cambridge, Cambridge, United Kingdom
    Contribution
    Data curation, Investigation, Methodology, Writing - original draft, Project administration, Writing - review and editing
    Contributed equally with
    Lucy Rivett, Sushmita Sridhar, Dominic Sparkes and Matthew Routledge
    Competing interests
    No competing interests declared

  6. Sally Forrest

    1. Department of Medicine, University of Cambridge, Cambridge, United Kingdom
    2. Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), Jeffrey Cheah Biomedical Centre, Cambridge Biomedical Campus, University of Cambridge, Cambridge, United Kingdom
    Contribution
    Data curation, Validation, Project administration
    Competing interests
    No competing interests declared

  7. Jamie Young

    Academic Department of Medical Genetics, University of Cambridge, Cambridge, United Kingdom
    Contribution
    Data curation, Formal analysis, Investigation
    Competing interests
    No competing interests declared

  8. Joana Pereira-Dias

    1. Department of Medicine, University of Cambridge, Cambridge, United Kingdom
    2. Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), Jeffrey Cheah Biomedical Centre, Cambridge Biomedical Campus, University of Cambridge, Cambridge, United Kingdom
    Contribution
    Data curation, Formal analysis
    Competing interests
    No competing interests declared

  9. William L Hamilton

    1. Department of Infectious Diseases, Cambridge University NHS Hospitals Foundation Trust, Cambridge, United Kingdom
    2. Clinical Microbiology and Public Health Laboratory, Public Health England, Cambridge, United Kingdom
    Contribution
    Data curation, Writing - original draft
    Competing interests
    No competing interests declared

  10. Mark Ferris

    Occupational Health and Wellbeing, Cambridge University Hospitals NHS Foundation Trust, Cambridge, United Kingdom
    Contribution
    Conceptualization, Writing - original draft, Project administration, Writing - review and editing
    Competing interests
    No competing interests declared

  11. M Estee Torok

    1. Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), Jeffrey Cheah Biomedical Centre, Cambridge Biomedical Campus, University of Cambridge, Cambridge, United Kingdom
    2. Department of Microbiology, Cambridge University NHS Hospitals Foundation Trust, Cambridge, United Kingdom
    Contribution
    Data curation, Supervision, Writing - review and editing
    Competing interests
    Reports grants from Academy of Medical Sciences and the Health Foundation, non-financial support from National Institute of Health Research, grants from Medical Research Council, grants from Global Challenges Research Fund, personal fees from Wellcome Sanger Institute, personal fees from University of Cambridge, personal fees from Oxford University Press

  12. Luke Meredith

    Division of Virology, Department of Pathology, University of Cambridge, Cambridge, United Kingdom
    Contribution
    Data curation, Formal analysis
    Competing interests
    No competing interests declared

  13. The CITIID-NIHR COVID-19 BioResource Collaboration

    Contribution
    Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Writing - original draft, Project administration
    Competing interests
    No competing interests declared
    1. Ravi Gupta
    2. Paul A Lyons
    3. Mark Toshner
    4. Ben Warne
    5. Josefin Bartholdson Scott
    6. Claire Cormie
    7. Harmeet Gill
    8. Iain Kean
    9. Mailis Maes
    10. Nicola Reynolds
    11. Michelle Wantoch
    12. Sarah Caddy
    13. Laura Caller
    14. Theresa Feltwell
    15. Grant Hall
    16. Myra Hosmillo
    17. Charlotte Houldcroft
    18. Aminu Jahun
    19. Fahad Khokhar
    20. Anna Yakovleva
    21. Helen Butcher
    22. Daniela Caputo
    23. Debra Clapham-Riley
    24. Helen Dolling
    25. Anita Furlong
    26. Barbara Graves
    27. Emma Le Gresley
    28. Nathalie Kingston
    29. Sofia Papadia
    30. Hannah Stark
    31. Kathleen E Stirrups
    32. Jennifer Webster
    33. Joanna Calder
    34. Julie Harris
    35. Sarah Hewitt
    36. Jane Kennet
    37. Anne Meadows
    38. Rebecca Rastall
    39. Criona O Brien
    40. Jo Price
    41. Cherry Publico
    42. Jane Rowlands
    43. Valentina Ruffolo
    44. Hugo Tordesillas
    45. Karen Brookes
    46. Laura Canna
    47. Isabel Cruz
    48. Katie Dempsey
    49. Anne Elmer
    50. Naidine Escoffery
    51. Heather Jones
    52. Carla Ribeiro
    53. Caroline Saunders
    54. Angela Wright
    55. Rutendo Nyagumbo
    56. Anne Roberts
    57. Ashlea Bucke
    58. Simone Hargreaves
    59. Danielle Johnson
    60. Aileen Narcorda
    61. Debbie Read
    62. Christian Sparke
    63. Lucy Warboys
    64. Kirsty Lagadu
    65. Lenette Mactavous
    66. Tim Gould
    67. Tim Raine
    68. Claire Mather
    69. Nicola Ramenatte
    70. Anne-Laure Vallier
    71. Mary Kasanicki
    72. Penelope-Jane Eames
    73. Chris McNicholas
    74. Lisa Thake
    75. Neil Bartholomew
    76. Nick Brown
    77. Surendra Parmar
    78. Hongyi Zhang
    79. Ailsa Bowring
    80. Geraldine Martell
    81. Natalie Quinnell
    82. Jo Wright
    83. Helen Murphy
    84. Benjamin J Dunmore
    85. Ekaterina Legchenko
    86. Stefan Gräf
    87. Christopher Huang
    88. Josh Hodgson
    89. Kelvin Hunter
    90. Jennifer Martin
    91. Federica Mescia
    92. Ciara O'Donnell
    93. Linda Pointon
    94. Joy Shih
    95. Rachel Sutcliffe
    96. Tobias Tilly
    97. Zhen Tong
    98. Carmen Treacy
    99. Jennifer Wood
    100. Laura Bergamaschi
    101. Ariana Betancourt
    102. Georgie Bowyer
    103. Aloka De Sa
    104. Maddie Epping
    105. Andrew Hinch
    106. Oisin Huhn
    107. Isobel Jarvis
    108. Daniel Lewis
    109. Joe Marsden
    110. Simon McCallum
    111. Francescsa Nice

  14. Martin D Curran

    Clinical Microbiology and Public Health Laboratory, Public Health England, Cambridge, United Kingdom
    Contribution
    Conceptualization, Methodology, Project administration
    Competing interests
    No competing interests declared

  15. Stewart Fuller

    National Institutes for Health Research Cambridge, Clinical Research Facility, Cambridge, United Kingdom
    Contribution
    Project administration
    Competing interests
    No competing interests declared

  16. Afzal Chaudhry

    Cambridge University Hospitals NHS Foundation Trust, Cambridge, United Kingdom
    Contribution
    Data curation, Software
    Competing interests
    Reports grants from Cambridge Biomedical Research Centre at CUHNFT

  17. Ashley Shaw

    National Institutes for Health Research Cambridge, Clinical Research Facility, Cambridge, United Kingdom
    Contribution
    Supervision, Project administration
    Competing interests
    No competing interests declared

  18. Richard J Samworth

    Statistical Laboratory, Centre for Mathematical Sciences, Cambridge, United Kingdom
    Contribution
    Data curation, Formal analysis
    Competing interests
    Reports grants from EPSRC fellowship

  19. John R Bradley

    1. Department of Medicine, University of Cambridge, Cambridge, United Kingdom
    2. National Institutes for Health Research Cambridge Biomedical Research Centre, Cambridge, United Kingdom
    Contribution
    Supervision, Project administration, Writing - review and editing
    Competing interests
    No competing interests declared

  20. Gordon Dougan

    1. Department of Medicine, University of Cambridge, Cambridge, United Kingdom
    2. Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), Jeffrey Cheah Biomedical Centre, Cambridge Biomedical Campus, University of Cambridge, Cambridge, United Kingdom
    Contribution
    Supervision, Project administration, Writing - review and editing
    Competing interests
    Reports grants from NIHR

  21. Kenneth GC Smith

    1. Department of Medicine, University of Cambridge, Cambridge, United Kingdom
    2. Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), Jeffrey Cheah Biomedical Centre, Cambridge Biomedical Campus, University of Cambridge, Cambridge, United Kingdom
    Contribution
    Supervision, Project administration, Writing - review and editing
    Competing interests
    Reports grants from Wellcome Trust

  22. Paul J Lehner

    1. Department of Infectious Diseases, Cambridge University NHS Hospitals Foundation Trust, Cambridge, United Kingdom
    2. Department of Medicine, University of Cambridge, Cambridge, United Kingdom
    3. Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), Jeffrey Cheah Biomedical Centre, Cambridge Biomedical Campus, University of Cambridge, Cambridge, United Kingdom
    Contribution
    Supervision, Project administration, Writing - review and editing
    Competing interests
    Reports grants from Wellcome Trust and Addenbrooke's Charitable Trust
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-9383-1054

  23. Nicholas J Matheson

    1. Department of Infectious Diseases, Cambridge University NHS Hospitals Foundation Trust, Cambridge, United Kingdom
    2. Department of Medicine, University of Cambridge, Cambridge, United Kingdom
    3. Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), Jeffrey Cheah Biomedical Centre, Cambridge Biomedical Campus, University of Cambridge, Cambridge, United Kingdom
    4. NHS Blood and Transplant, Cambridge, United Kingdom
    Contribution
    Supervision, Project administration, Writing - review and editing
    Competing interests
    Reports grants from MRC (UK) and NHS Blood and Transfusion
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-3318-1851

  24. Giles Wright

    Occupational Health and Wellbeing, Cambridge University Hospitals NHS Foundation Trust, Cambridge, United Kingdom
    Contribution
    Project administration, Writing - review and editing
    Competing interests
    No competing interests declared

  25. Ian G Goodfellow

    Division of Virology, Department of Pathology, University of Cambridge, Cambridge, United Kingdom
    Contribution
    Data curation, Formal analysis, Supervision, Project administration, Writing - review and editing
    Contributed equally with
    Stephen Baker and Michael P Weekes
    Competing interests
    Reports grants from Wellcome Trust and Addenbrooke's Charitable Trust
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-9483-510X

  26. Stephen Baker

    1. Department of Medicine, University of Cambridge, Cambridge, United Kingdom
    2. Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), Jeffrey Cheah Biomedical Centre, Cambridge Biomedical Campus, University of Cambridge, Cambridge, United Kingdom
    Contribution
    Conceptualization, Data curation, Formal analysis, Methodology, Writing - original draft, Project administration, Writing - review and editing
    Contributed equally with
    Ian G Goodfellow and Michael P Weekes
    Competing interests
    Reports grants from Wellcome Trust and Addenbrooke's Charitable Trust

  27. Michael P Weekes

    1. Department of Infectious Diseases, Cambridge University NHS Hospitals Foundation Trust, Cambridge, United Kingdom
    2. Department of Medicine, University of Cambridge, Cambridge, United Kingdom
    3. Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), Jeffrey Cheah Biomedical Centre, Cambridge Biomedical Campus, University of Cambridge, Cambridge, United Kingdom
    Contribution
    Conceptualization, Data curation, Investigation, Methodology, Writing - original draft, Project administration, Writing - review and editing
    Contributed equally with
    Ian G Goodfellow and Stephen Baker
    For correspondence
    mpw1001@cam.ac.uk
    Competing interests
    Reports grants from Wellcome Trust
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-3196-5545

Funding

Wellcome (108070/Z/15/Z)

  • Michael P Weekes

Wellcome (215515/Z/19/Z)

  • Stephen Baker

Wellcome (207498?Z/17/Z)

  • Ian G Goodfellow

Wellcome (206298/B/17/Z)

  • Ian G Goodfellow

Wellcome (210688/Z/18/Z)

  • Paul J Lehner

Wellcome (200871/Z/16/Z)

  • Kenneth G C Smith

Addenbrooke's Charitable Trust, Cambridge University Hospitals

  • Paul J Lehner
  • Ian G Goodfellow
  • Stephen Baker
  • Michael P Weekes

Medical Research Council (MR/P008801/1)

  • Nicholas J Matheson

NHS Blood and Transplant (WPA15-02)

  • Nicholas J Matheson

National Institute for Health Research (Cambridge Biomedical Research Centre)

  • John R Bradley
  • M Estee Torok
  • Afzal Chaudhry
  • Gordon Dougan

Academy of Medical Sciences (Clinician Scientist Fellowship)

  • M Estee Torok

Engineering and Physical Sciences Research Council (EP/P031447/1)

  • Richard J Samworth

Engineering and Physical Sciences Research Council (EP/N031938/1)

  • Richard J Samworth

Cancer Research UK (PRECISION Grand Challenge C38317/A24043)

  • Jamie Young

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Acknowledgements

This work was supported by the Wellcome Trust Senior Research Fellowships 108070/Z/15/Z to MPW, 215515/Z/19/Z to SGB and 207498/Z/17/Z to IGG; Collaborative award 206298/B/17/Z to IGG; Principal Research Fellowship 210688/Z/18/Z to PJL; Investigator Award 200871/Z/16/Z to KGCS; Addenbrooke’s Charitable Trust (to MPW, SGB, IGG and PJL); the Medical Research Council (CSF MR/P008801/1 to NJM); NHS Blood and Transfusion (WPA15-02 to NJM); National Institute for Health Research (Cambridge Biomedical Research Centre at CUHNFT), to JRB, MET, AC and GD, Academy of Medical Sciences and the Health Foundation (Clinician Scientist Fellowship to MET), Engineering and Physical Sciences Research Council (EP/P031447/1 and EP/N031938/1 to RS),Cancer Research UK (PRECISION Grand Challenge C38317/A24043 award to JY). Components of this work were supported by the COVID-19 Genomics UK Consortium, (COG-UK), which is supported by funding from the Medical Research Council (MRC) part of UK Research and Innovation (UKRI), the National Institute of Health Research (NIHR) and Genome Research Limited, operating as the Wellcome Sanger Institute

The CITIID-NIHR COVID-19 BioResource Collaboration 

Principal Investigators: Stephen Baker, John Bradley, Gordon Dougan, Ian Goodfellow, Ravi Gupta, Paul J Lehner, Paul A Lyons, Nicholas J Matheson, Kenneth GC Smith, M Estee Torok, Mark Toshner, Michael P Weekes

Infectious Diseases Department: Nicholas K Jones, Lucy Rivett, Matthew Routledge, Dominic Sparkes, Ben Warne

SARS-CoV-2 testing team: Josefin Bartholdson Scott, Claire Cormie, Sally Forrest, Harmeet Gill, Iain Kean, Mailis Maes, Joana Pereira-Dias, Nicola Reynolds, Sushmita Sridhar, Michelle Wantoch, Jamie Young

COG-UK Cambridge Sequencing Team: Sarah Caddy, Laura Caller, Theresa Feltwell, Grant Hall, William Hamilton, Myra Hosmillo, Charlotte Houldcroft, Aminu Jahun, Fahad Khokhar, Luke Meredith, Anna Yakovleva

NIHR BioResource: Helen Butcher, Daniela Caputo, Debra Clapham-Riley, Helen Dolling, Anita Furlong, Barbara Graves, Emma Le Gresley, Nathalie Kingston, Sofia Papadia, Hannah Stark, Kathleen E. Stirrups, Jennifer Webster

Research nurses: Joanna Calder, Julie Harris, Sarah Hewitt, Jane Kennet, Anne Meadows, Rebecca Rastall, Criona O,Brien, Jo Price, Cherry Publico, Jane Rowlands, Valentina Ruffolo, Hugo Tordesillas 

NIHR Cambridge Clinical Research Facility: Karen Brookes, Laura Canna, Isabel Cruz, Katie Dempsey, Anne Elmer, Naidine Escoffery, Stewart Fuller, Heather Jones, Carla Ribeiro, Caroline Saunders, Angela Wright 

Cambridge Cancer Trial Centre: Rutendo Nyagumbo, Anne Roberts

Clinical Research Network Eastern: Ashlea Bucke, Simone Hargreaves, Danielle Johnson, Aileen Narcorda, Debbie Read, Christian Sparke, Lucy Warboys

Administrative staff, CUH: Kirsty Lagadu, Lenette Mactavous

CUH NHS Foundation Trust: Tim Gould, Tim Raine, Ashley Shaw

Cambridge Cancer Trials Centre: Claire Mather, Nicola Ramenatte, Anne-Laure Vallier

Legal/Ethics: Mary Kasanicki

CUH Improvement and Transformation Team: Penelope-Jane Eames, Chris McNicholas, Lisa Thake

Clinical Microbiology & Public Health Laboratory (PHE): Neil Bartholomew, Nick Brown, Martin Curran, Surendra Parmar, Hongyi Zhang

Occupational Health: Ailsa Bowring, Mark Ferris, Geraldine Martell, Natalie Quinnell, Giles Wright, Jo Wright

Health and Safety: Helen Murphy

Department of Medicine Sample Logistics: Benjamin J. Dunmore, Ekaterina Legchenko, Stefan Gräf, Christopher Huang, Josh Hodgson, Kelvin Hunter, Jennifer Martin, Federica Mescia, Ciara O’Donnell, Linda Pointon, Joy Shih, Rachel Sutcliffe, Tobias Tilly, Zhen Tong, Carmen Treacy, Jennifer Wood

Department of Medicine Sample Processing and Acquisition: Laura Bergamaschi, Ariana Betancourt, Georgie Bowyer, Aloka De Sa, Maddie Epping, Andrew Hinch, Oisin Huhn, Isobel Jarvis, Daniel Lewis, Joe Marsden, Simon McCallum, Francescsa Nice, Ommar Omarjee, Marianne Perera, Nika Romashova, Mateusz Strezlecki, Natalia Savoinykh Yarkoni, Lori Turner

Epic team/other computing support: Barrie Bailey, Afzal Chaudhry, Rachel Doughton, Chris Workman

Statistics/modelling: Richard J Samworth, Caroline Trotter

Ethics

Human subjects: As a study of healthcare-associated infections, this investigation is exempt from requiring ethical approval under Section 251 of the NHS Act 2006 (see also the NHS Health Research Authority algorithm, available at http://www.hra-decisiontools.org.uk/research/, which concludes that no formal ethical approval is required). Written consent was obtained from each HCW described in the anonymised case vignettes.

Copyright

© 2020, Rivett et al.

This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.

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  1. Lucy Rivett
  2. Sushmita Sridhar
  3. Dominic Sparkes
  4. Matthew Routledge
  5. Nick K Jones
  6. Sally Forrest
  7. Jamie Young
  8. Joana Pereira-Dias
  9. William L Hamilton
  10. Mark Ferris
  11. M Estee Torok
  12. Luke Meredith
  13. The CITIID-NIHR COVID-19 BioResource Collaboration
  14. Martin D Curran
  15. Stewart Fuller
  16. Afzal Chaudhry
  17. Ashley Shaw
  18. Richard J Samworth
  19. John R Bradley
  20. Gordon Dougan
  21. Kenneth GC Smith
  22. Paul J Lehner
  23. Nicholas J Matheson
  24. Giles Wright
  25. Ian G Goodfellow
  26. Stephen Baker
  27. Michael P Weekes
(2020)
Screening of healthcare workers for SARS-CoV-2 highlights the role of asymptomatic carriage in COVID-19 transmission
eLife 9:e58728.
https://doi.org/10.7554/eLife.58728

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https://doi.org/10.7554/eLife.58728

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    1. Epidemiology and Global Health
    2. Microbiology and Infectious Disease

    Efficacy of FFP3 respirators for prevention of SARS-CoV-2 infection in healthcare workers

    Mark Ferris, Rebecca Ferris ... Michael P Weekes
    Research Advance Updated

    Background:

    Respiratory protective equipment recommended in the UK for healthcare workers (HCWs) caring for patients with COVID-19 comprises a fluid-resistant surgical mask (FRSM), except in the context of aerosol generating procedures (AGPs). We previously demonstrated frequent pauci- and asymptomatic severe acute respiratory syndrome coronavirus 2 infection HCWs during the first wave of the COVID-19 pandemic in the UK, using a comprehensive PCR-based HCW screening programme (Rivett et al., 2020; Jones et al., 2020).

    Methods:

    Here, we use observational data and mathematical modelling to analyse infection rates amongst HCWs working on ‘red’ (coronavirus disease 2019, COVID-19) and ‘green’ (non-COVID-19) wards during the second wave of the pandemic, before and after the substitution of filtering face piece 3 (FFP3) respirators for FRSMs.

    Results:

    Whilst using FRSMs, HCWs working on red wards faced an approximately 31-fold (and at least fivefold) increased risk of direct, ward-based infection. Conversely, after changing to FFP3 respirators, this risk was significantly reduced (52–100% protection).

    Conclusions:

    FFP3 respirators may therefore provide more effective protection than FRSMs for HCWs caring for patients with COVID-19, whether or not AGPs are undertaken.

    Funding:

    Wellcome Trust, Medical Research Council, Addenbrooke’s Charitable Trust, NIHR Cambridge Biomedical Research Centre, NHS Blood and Transfusion, UKRI.

    1. Epidemiology and Global Health
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    Single-dose BNT162b2 vaccine protects against asymptomatic SARS-CoV-2 infection

    Nick K Jones, Lucy Rivett ... Michael P Weekes
    Research Advance Updated

    The BNT162b2 mRNA COVID-19 vaccine (Pfizer-BioNTech) is being utilised internationally for mass COVID-19 vaccination. Evidence of single-dose protection against symptomatic disease has encouraged some countries to opt for delayed booster doses of BNT162b2, but the effect of this strategy on rates of asymptomatic SARS-CoV-2 infection remains unknown. We previously demonstrated frequent pauci- and asymptomatic SARS-CoV-2 infection amongst healthcare workers (HCWs) during the UK’s first wave of the COVID-19 pandemic, using a comprehensive PCR-based HCW screening programme (Rivett et al., 2020; Jones et al., 2020). Here, we evaluate the effect of first-dose BNT162b2 vaccination on test positivity rates and find a fourfold reduction in asymptomatic infection amongst HCWs ≥12 days post-vaccination. These data provide real-world evidence of short-term protection against asymptomatic SARS-CoV-2 infection following a single dose of BNT162b2 vaccine, suggesting that mass first-dose vaccination will reduce SARS-CoV-2 transmission, as well as the burden of COVID-19 disease.

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    Research Advance Updated

    Previously, we showed that 3% (31/1032)of asymptomatic healthcare workers (HCWs) from a large teaching hospital in Cambridge, UK, tested positive for SARS-CoV-2 in April 2020. About 15% (26/169) HCWs with symptoms of coronavirus disease 2019 (COVID-19) also tested positive for SARS-CoV-2 (Rivett et al., 2020). Here, we show that the proportion of both asymptomatic and symptomatic HCWs testing positive for SARS-CoV-2 rapidly declined to near-zero between 25th April and 24th May 2020, corresponding to a decline in patient admissions with COVID-19 during the ongoing UK ‘lockdown’. These data demonstrate how infection prevention and control measures including staff testing may help prevent hospitals from becoming independent ‘hubs’ of SARS-CoV-2 transmission, and illustrate how, with appropriate precautions, organizations in other sectors may be able to resume on-site work safely.

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